This match was the first of two scheduled friendlies for Amajita as they ramped up their preparations for the 2024 CAF Under-20 Africa Cup of Nations and COSAFA Qualifier set for September.
Amajita began the game with confidence and controlled possession from the outset.
Their efforts paid off in the 20th minute when Mfundo Vilakazi found the net to open the scoring.
Just six minutes later, Kutlwano Lethlaku extended their lead with a close-range finish.
Despite a spirited response from Lesotho, with Paseka Maile scoring in the 39th minute, the visitors maintained their advantage.
The match was firmly in Amajita's control when substitute Shakeel April added a third goal, sealing the 3-1 win.
Amajita will face Lesotho again on Sunday, 18 August, in their final friendly of the tour.