The 32-year-old joins the Motsepe Foundation Championship on a free transfer from the Urban Warriors following their relegation to the ABC Motsepe.
Seedat began his career with ASD Cape Town and has also represented KSC Lokeren, Bidvest Wits, Degerfors, Milano United and Cape Town City.
A Kruger statement read: "The Village Boys strengthen their defence!
"We're proud to welcome Seedat Ebrahim, former Cape Town Spurs player, to the Village Boys family.
"His experience and skill will be a huge boost to our backline. Welcome to the Village, Seedat!"
Kruger ended last season in fifth place, missing out on a spot in the promotion/relegation play-offs on the final day of the 2024/25 season.
They are current in eighth place with five points from their opening four games.